Exploring the Cardioprotective Mechanisms of the Ethyl Acetate Fraction of Vitex cofassus Through Network Pharmacology
DOI:
https://doi.org/10.36590/jika.v8i2.1755Keywords:
cardiovascular, network pharmacology, src, Vitex cofassusAbstract
Cardiovascular diseases (CVDs) are the leading cause of mortality worldwide, with an increasing prevalence each year. The complexity of CVD pathophysiology, which involves multiple biological pathways, required a multitarget therapeutic approach. This study aimed to investigate the potential anti-cardiovascular activity of the ethyl acetate fraction of Vitex cofassus leaves through integrated phytochemical analysis, network pharmacology and molecular docking approaches. The ethyl acetate fraction of Vitexcofassus leaves was analyzed using liquid chromatography-high-resolution mass spectrometry (LC-HRMS), identifying 232 compounds, of which 104 met drug-likeness criteria. Network pharmacology screening revealed 274 potential cardiovascular-related targets. Gene Ontology (GO) analysis highlighted enriched biological processes including responses to oxygen-containing compounds, while cellular component analysis localized target genes primarily to plasma membrane structures, neuron projections, and synapses. Molecular functions were significantly associated with signaling receptor activity and kinase activity, while KEGG pathway analysis further linked Vitex cofassus to key cardiovascular pathways including neuroactive ligand-receptor interactions.The results of Network pharmacology analysis identified SRC, HSP90AA1 and TNF-a proteins as potential targets associated with cardiovascular diseases. Molecular docking studies demonstrated strong binding affinities of selected compounds to HSP90AA1, particularly Compound 74 (-9.703 kcal/mol) and Compound 199 (-9.471 kcal/mol), surpassing the HSP90AA1 native ligand. Similarly, TNF-α binding analysis revealed potent interactions, with Compound 20 (-4.483) and Compound 74 (-4.444) exhibiting superior affinity compared to the native ligand. In conclusion, these findings suggest that Vitex cofassus ethyl acetate fraction contains bioactive compounds with multi-target cardiovascular protective effects, supporting its potential as a therapeutic candidate for cardiovascular diseases.
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Amberger, J.S., Bocchini, C.A., Schiettecatte, F., Scott, A.F., Hamosh, A., 2015. OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an Online Catalog of Human Genes and Genetic Disorders. Nucleic Acids Research 43, D789–D798. https://doi.org/10.1093/nar/gku1205
Arba, M., Ihsan, S., Fatihah, N., Jamili, J., 2025. Molecular Mechanism of Avicennia marina (Forssk.) Vierh. in Inhibiting Hepatitis C Virus Based on Network Pharmacology and Molecular Docking. Tropical Journal of Natural Product Research 9(4), 1449–1456. https://doi.org/10.26538/tjnpr/v9i4.10
Arba, M., Ihsan, S., Hatma, F.M.I., Jamili, J., Wahyudi, S.T., Wahyuni, T.S., 2025. Inhibition of Hepatitis C Virus by Avicennia marina (Forssk.) Vierh. Leaves Extract: Liquid Chromatography-High-Resolution Mass Spectrometry, Network Pharmacology, Molecular Simulation, and in Vitro Study. Journal of Herbmed Pharmacol 14(2), 188-199. https://doi.org/10.34172/jhp.2025.52905
Arba, M., Paradis, N., Wahyudi, S.T., Brunt, D.J., Hausman, K.R., Lakernick, P.M., Singh, M., Wu, C., 2022. Unraveling the Binding Mechanism of the Active form of Remdesivir to RdRp of SARS-CoV-2 and Designing New Potential Analogues: Insights from Molecular Dynamics Simulations. Chemical Physics Letters 799, 1-22. https://pubmed.ncbi.nlm.nih.gov/35475235/
Citra, S.N.A.L., Arfan, A., Alroem, A., Bande, L.S., Irnawati, I., 2025. Docking-Based Workflow and ADME Prediction of Some Compounds in Curcuma longa and Andrographis paniculata as Polymerase PA-PB1 Inhibitors of Influenza A/H5N1 Virus. Journal of Research in Pharmacy 27(1), 221-231. https://dergipark.org.tr/en/pub/jrespharm/article/1686887
Ge, S.X., Jung, D., Yao, R., 2020. ShinyGO: A Graphical Gene-Set Enrichment Tool for Animals and Plants. Bioinformatics 36(8), 2628–2629. https://doi.org/10.1093/bioinformatics/btz931
Goh, L.H., Chong, B., Lubbe, S.C.C., Jayabaskaran, J., Nagarajan, S., Chia, J., Johnson, C.O., Dai, X., Valderas, J.M., Aji, B., Aldecoa, K.A.T., Aljunid, S.M., Ananda. R.A., Apostol, G.L.C., Ariffin, H., Asri. Y., Baig, A.A., Bermudez. A.N.C., Bisignano, C., Cenderadewi, M., Chen, H., Dalakoti, M., Efendi, F., Faraon, E.J.A.A., Fauk, N.K., Garcia, F.B., Hargono, A., Has, E.M.M., Hasan, F., Hay, S.I., Ibrahim, U.I., Iqhrammullah, M., Iskandar, B., Ismail, N.E., Jamaluddin, J., Jonas, J.B., Kamarajah, S.K., Kim, Y.J., Kurniasari, M.D., Kusnali, A., Kustanti, C.Y.Y., Lai, D.T.C., Lukas, G.A., Ma. Z.F., Martini, S., Marzo, R.R., Melisa, S., Muharram, F.R., Murray, C.J.L., Musa, K.I., Nainu, F., Nascimento. G.G., Nur, A., Ong, S.K., Pepito, V.C.F., Porntaveetus, T., Pribadi, D.R.A., Rahmawaty, S., Ramadhan, K., Ramazanu, S., Romadlon, D.S., Samodra, Y.L., Selvaraj, S., Setiawan, C.H., Shaharudin, S., Subramaniyan, V., Sulistiyorini, D., Sun, Z., Tarigan, I.U., Ticoalu, J.H.V., Venketasubramanian, N., Wahidin, M., Wicaksana, A.L., Wijayanto, M.A., Wilandika, A., Zuniga, Y.M.H., Roth. G.A., Chew, N.W.S., Ng, M., 2025. The Epidemiology and Burden of Cardiovascular Diseases in Countries of the Association of Southeast Asian Nations (ASEAN), 1990-2021: Findings from the Global Burden of Disease Study 2021. The Lancet Public Health 10(6), e467-e479. https://pubmed.ncbi.nlm.nih.gov/40441814/
Issa, N.T., Badiavas, E.V., Schürer, S., 2019. Research Techniques Made Simple: Molecular Docking in Dermatology - A Foray into In Silico Drug Discovery. Journal of Investigative Dermatology 139(12), 2400-2408. https://pubmed.ncbi.nlm.nih.gov/31753122/
Jiang, L.R., Qin, Y., Nong, J.L., An, H., 2021. Network Pharmacology Analysis of Pharmacological Mechanisms Underlying the Anti-Type 2 Diabetes Mellitus Effect of Guava Leaf. Arabian Journal of Chemistry 14(6), 1-16. doi: 10.1016/j.arabjc.2021.103143
Jurado, J., Anderson, N., Datcher, I., Foster, C., Jackson, P., Hidalgo, B., 2025. Striving Towards Equity in Cardiovascular Genomics Research. Current Atherosclerosis Reports 27(34), 1-10. https://link.springer.com/article/10.1007/s11883-025-01277-z
Kanehisa, M., Furumichi, M., Tanabe, M., Sato, Y., Morishima, K., 2017. KEGG: New Perspectives on Genomes, Pathways, Diseases and Drugs. Nucleic Acids Research 45(D1), D353–D361. https://pubmed.ncbi.nlm.nih.gov/27899662/
Keiser, M.J., Roth, B.L., Armbruster, B.N., Ernsberger, P., Irwin, J.J., Shoichet, B.K., 2007. Relating Protein Pharmacology by Ligand Chemistry. Nature Biotechnology 25(2), 197–206. https://pubmed.ncbi.nlm.nih.gov/17287757/
Libby, P., Ridker, P.M., Maseri, A., 2002. Inflammation and Atherosclerosis. Circulation 105(9), 1135-1143. https://doi.org/10.1161/hc0902.104353
Meeks, K.A.C., Agyemang, C., 2025. Cardiovascular Disease Burden among African Migrants. Current Atherosclerosis Reports 27(59), 1-10. https://link.springer.com/article/10.1007/s11883-025-01307-w
Parsa, S., Noroozpoor, R., Dehghanbanadaki, H., Khateri, S., Moradi, Y., 2025. Endometriosis and Risk of Cardiovascular Disease: A Systematic Review and Meta-Analysis. BMC Public Health 25(1), 1-16. https://doi.org/10.1186/s12889-025-21486-0
Prasad, E.M., Mopuri, R., Islam, M.S., Kodidhela, L.D., 2017. Cardioprotective Effect of Vitex Negundo on Isoproterenol-Induced Myocardial Necrosis in Wistar Rats: A Dual Approach Study. Biomedicine & Pharmacotherapy 85, 601-610. https://doi.org/10.1016/j.biopha.2016.11.069
Qureshi, M., Ishaq, K., Daniyal, M., Iftikhar, H., Rehman, M.Z., Salar, S.A.A., 2025. Forecasting Cardiovascular Disease Mortality using Artificial Neural Networks in Sindh, Pakistan. BMC Public Health 25(34), 1-14. https://doi.org/10.1186/s12889-024-21187-0
Rasamison, V.E., Ranaivo-Harimanana, L., Cao, S., Pan, E., Ratovoson, F., Randriantafika, F., Rakotondrajaona, R., Rakotonandrasana, S., Andriantsiferana, R., Kingston, D.G.I., 2009. A New Labdane Diterpene from Vitex Cauliflora Moldenke from the Madagascar Rainforest. Fitoterapia 81(1), 55-58. https://doi.org/10.1016/j.fitote.2009.07.007
Rebhan, M., Chalifa-Caspi, V., Prilusky, J., Lancet, D., 1998. GeneCards: A Novel Functional Genomics Compendium with Automated Data Mining and Query Reformulation Support. Bioinformatics 14(8), 656–664. https://academic.oup.com/bioinformatics/article/14/8/656/228862
Sastry, G.M., Adzhigirey, M., Day, T., Annabhimoju, R., Sherman, W., 2013. Protein and Ligand Preparation: Parameters, Protocols, and Influence on Virtual Screening Enrichments. Journal of Computer-Aided Molecular Design 27(3), 221-234. https://pubmed.ncbi.nlm.nih.gov/23579614/
Shannon, P., Markiel, A., Ozier, O., Baliga, N.S., Wang, J.T., Ramage, D., Amin, N., Schwikowski, B., Ideker, T., 2003. Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks. Genome Research 13(11), 2498–2504. https://pubmed.ncbi.nlm.nih.gov/14597658/
Souto, E.B., Durazzo, A., Nazhand, A., Lucarini, M., Zaccardelli, M., Souto, S.B., Silva, A.M., Severino, P., Novellino, E., Santini, A., 2020. Vitex agnus-castus L.: Main Features and Nutraceutical Perspectives. Forests 11(7), 1-16. https://doi.org/10.3390/f11070761
Tsao, C.W., Aday, A.W., Almarzooq, Z.I., Alonso, A., Beaton, A.Z., Bittencourt, M.S., Boehme, A.K., Buxton, A.E., Carson, A.P., Commodore-Mensah, Y., Elkind, M.S.V., Evenson, K.R., Eze-Nliam, C., Ferguson, J.F., Generoso, G., Ho, J,E., Kalani, R., Khan, S.S., Kissela, B,M., Knutson, K.L., Levine, D.A., Lewis, T.T., Liu, J., Loop, M.S., Ma, J., Mussolino, M.E., Navaneethan, S.D., Perak, A.M., Poudel, R., Rezk-Hanna, M., Roth, G.A., Schroeder, E.B., Shah, S.H., Thacker, E.L., VanWagner, L.B., Virani, S.S., Voecks, J.H., Wang. N.Y., Yaffe, K., Martin, S.S., 2022. Heart Disease and Stroke Statistics 2022 Update: A Report from the American Heart Association. Circulation 145(8) e153-e639. https://pubmed.ncbi.nlm.nih.gov/35078371/
Vulpetti, A., Rondeau, J.M., Bellance, M.H., Blank, J., Boesch, R., Boettcher, A., Bornancin, F., Buhr, S., Connor, L.E., Dumelin, C.E., Esser, O., Hediger, M., Hintermann, S., Hommel, U., Koch, E., Lapointe, G., Leder, L., Lehmann, S., Lehr, P., Meier, P., Muller, L., Ostermeier, D., Ramage, P., Schiebel-Haddad, S., Smith, A.B., Stojanovic, A., Velcicky, J., Yamamoto, R., Hurth, K., 2024. Ligandability Assessment of IL-1β by Integrated Hit Identification Approaches. Journal of Medicinal Chemistry 67(10), 8141-8160. https://pubmed.ncbi.nlm.nih.gov/38728572/
Windarsih, A., Suratno, S., Warmiko, H.D., Indrianingsih, A.W., Rohman, A., Ulumuddin, Y.I., 2022. Untargeted Metabolomics and Proteomics Approach using Liquid Chromatography-Orbitrap High Resolution Mass Spectrometry to Detect Pork Adulteration in Pangasius hypopthalmus Meat. Food Chemistry 386, 1-12. https://pubmed.ncbi.nlm.nih.gov/35367799/
Zhou, W., Wang, Y., Lu, A., Zhang, G., 2016. Systems Pharmacology in Small Molecular Drug Discovery. International Journal of Molecular Sciences 17(2), 1-16. https://pmc.ncbi.nlm.nih.gov/articles/PMC4783977/
Zhou, Y., Zhou, B., Pache, L., Chang, M., Khodabakhshi, A.H., Tanaseichuk, O., Benner, C., Chanda, S.K., 2019. Metascape Provides a Biologist-Oriented Resource for the Analysis of Systems-Level Datasets. Nature Communications 10(1), 1-6. https://doi.org/10.1038/s41467-019-09234-6
Zubair, M.S., Maulana, S., Widodo, A., Pitopang, R., Arba, M., Hariono, M., 2021. GC-MS, LC-MS/MS, Docking and Molecular Dynamics Approaches to Identify Potential SARS-CoV-2 3-Chymotrypsin-Like Protease Inhibitors from Zingiber Officinale Roscoe. Molecules 26(17), 1-15. https://doi.org/10.3390/molecules26175230
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